Composition of the culturable bacterial community associated with the water column and soft tissues from oysters of the mangrove ecosystem at Honda Swamp, Colombian Caribbean
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Mar 17, 2023
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Abstract
The study of bacterial communities is highly relevant in relation to the knowledge of global biological biodiversity and the biogeochemical cycles of the planet. Microbiological activity is the basis of ecosystems functioning, among these are the mangroves, which offer a wide variety of goods and services to humanity. Nevertheless, they have been severely impacted by anthropogenic activities such as felling, heavy metal pollution, water enrichment, overexploitation of resources, among others. This research aimed to characterize the culturable bacterial community from the water column and the oyster Crassostrea rhizophorae muscle tissue in a mangrove ecosystem from the Cartagena Bay, Colombian Caribbean as a baseline for future studies on bioremediation treatments. To accomplish this, four samplings were conducted over the course of a year, including contrasting climatic seasons (e.g., windy and rainy), collecting oyster individuals from mangroves and samples from superficial water. The bacterial community comprised 25 species, from which 9 were exclusive for the oyster tissue, 7 for the water column, and 9 generalists isolated from both types of samples. Enterobacter cloacae was the most frequent species during the year, followed by Escherichia coli and Erwinia sp.
There were significant differences in the species composition between the sampling months (ANOSIM, R = 0:492; p=D 0:001), because of the presence of a higher number of exclusive species in December than in the other months. Furthermore, the physicochemical variables that presented a major influence on the bacterial community composition were the wind velocity and the dissolved oxygen. The review of this research findings will allow to detect if any of the identified species could be exploited for bioremediation treatments, and it will contribute to the preservation of marine-coastal water bodies biodiversity.
Keywords
Bacterial community, Bioremediation, Crassostrea rhizophorae, Swamp, Mangrove
References
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doi: 10.1007/s15010-014-0638-9
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Gomes N, Borges L, Paranhos R, Pinto F, Mendonça-Hagler L, Smalla, K. Exploring the diversity of bacterial communities in sediments of urban mangrove forests. FEMS. Microbial Ecology, 66: 96–109. 2008
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González M, Graü C, Bettina L, Vásquez-Suárez A. Calidad microbiológica de la ostra Crassostrea rhizophorae y aguas de extracción, Estado Sucre, Venezuela. Revista Científica, 19(6): 659–666. 2009.
https://www.redalyc.org/pdf/959/95911621014.pdf
Graü C, La Barbera A, Zerpa A, Silva S, Gallardo O. Aislamiento de Vibrio spp. Y evaluación de la condición sanitaria de los moluscos bivalvos Arca zebra y Perna procedente de la costa nororiental del edo. Sucre. Venezuela. Veterinaria completa, 14(6): 1–17. 2004.
doi:10.1111/j.1574-6941.2008.00519.x
Gutiérrez-Moreno C, Marrugo M, Andrade C. Respuesta del ambiente marino a algunos eventos meteorológicos sinópticos medidos sobre los arrecifes de San Andrés y de las Islas del Rosario, Caribe colombiano. Boletín de Investigaciones Marinas y Costeras, 41(1): 219–228. 2012.
http://www.scielo.org.co/pdf/mar/v41n1/v41n1a12.pdf
Hammer O, Harper D, Ryan P. PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontologia Electronica, 4: 1–9. 2001.
https://palaeo-electronica.org/2001_1/past/past.pdf
Hawkins SJ, Allcock AL, Bates AE, Firth LB, Smith IP, Swearer SE, Todd PA. Oceanography and Marine Biology: An Annual Review. Oceanography and Marine Biology, 58: 395–440. 2020.
Hemraj DA, Hossain A, Ye Q, Qin J, Leterme S. Plankton bioindicators of environmental conditions in coastal lagoons. Estuarine, Coastal and Shelf Science 184: 102–114. 2017.
doi: 10.1016/j.ecss.2016.10.045
ICONTEC. Norma Técnica Colombiana 4458. Microbiología de alimentos y de alimentos para animales. Método horizontal para el recuento de Coliformes o Escherichia coli o ambos. Técnica de recuento de colonias utilizando medios fluorogénicos o cromogénicos. Instituto Colombiano de Normas Técnicas y Certificación (ICONTEC), 12: 12. 2007.
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ICONTEC. Norma técnica colombiana. NTC –ISO. 5667-2. Gestión Ambiental. Calidad del Agua. Muestreo. Técnicas Generales de Muestreo. Instituto Colombiano de Normas Técnicas y Certificación (ICONTEC), 11: 3. 2003.
Kavaruma V & Esposito E. Biotechnological strategies applied to the decontamination of soils polluted with heavy metals. Biotechnology advances, 28: 61–69. 2010.
doi: 10.1016/j.biotechadv.2009.09.002
Khan Z, Nisar M, Hussain S, Arshad M. Cadmium resistance mechanism in Escherichia coli P4 and its potential use to bioremediate environmental cadmium. Applied Microbiology and Biotechnology 99(24). 2015.
doi: 10.1007/s00253-015-6901-x
Lee R & Morgan O. Environmental Factors Inf luencing the Microbiological Contamination of Commercially Harvested Shellfish. Water Science and Technology, 47(3): 65–70. 2003.
https://pubmed.ncbi.nlm.nih.gov/12639007/
Ley General Ambiental de Colombia. LEY 99 DE 1993. Ministerio del Medio Ambiente. No. 41. p.p. 146.
Maciel-Souza MC, Macrae A, Volpon A, Ferreira P, Mendonça-Hagler L. Chemical and microbiological characterization of mangrove sediments after a large oil-spill in Guanabara Bay - RJ - Brazil. Brazilian Journal of Microbiology 37: 262–266. 2006.
Mendez P, Marinho PH, Lima MA. Copper influence on polyphosphate metabolism of Cunninghamella elegans. Brazilian Journal of Microbiology 36: 315–320. 2005.
doi: 10.1590/S1517-83822005000400002
Merchán A. Monitoreo de los manglares de ciénaga Honda-Puerto Bahía, Bolívar. Consultoría y Monitoreo Ambientales (MCS). Cartagena. 2016.
MINSALUD- Ministerio de Salud. Manual de técnicas recomendadas para el análisis microbiológico de alimentos. Bogotá, COLOMBIA. 1981.
Niu X, Edmiston H, Bailey G. Time Series Models for Salinity and Other Environmental Factors in the Apalachicola Estuarine System. Estuarine, Coastal and Shelf Science, 46(4): 549–563.
1998.
doi: 10.1006/ecss.1997.0294
Ortiz A, Robles K, Urrego L, Romero M. Diversidad e interacciones biológicas en el ecosistema de manglar. Revista de Ciencias, 22(2): 111–127. 2018.
doi: 10.25100/rc.v22i2.7925
Panigatti M, Griffa C, Boglione R, Gentinetta F, Cassina D. Uso de Escherichia coli para biorremediación de efluentes contaminados por cromo (VI). Avances en Ciencias e Ingeniería, 3:11–24. 2012.
https://www.redalyc.org/articulo.oa?id=323627686002
Pérez SR, Camacho P, Gómez MJ, Ábalos RA, Viñas M, Cantero MD. Aislamiento y selección de una cepa bacteriana degradadora de hidrocarburos a partir de suelos contaminados con petróleo. Revista CENIC, 39(1): 44–45. 2008.
https://revista.cnic.cu/index.php/RevBiol/article/view/651/531
Peixoto R, Chaer G, Carmo F, Araújo F, Paes J, Volpon A, Santiago G, Rosado A. Bacterial communities reflect the spatial variation in pollutant levels in Brazilian mangrove sediment. Antonie van Leeuwenhoek, 99: 341–354. 2011.
doi: 10.1007/s10482-010-9499-0
Pinilla G, Duarte J, Vega L. Índice de estado limnológico (IEL) para evaluar las condiciones ecológicas de las ciénagas del Canal del Dique, Colombia. Acta Biológica Colombiana, 15(2):169–188. 2010.
https://revistas.unal.edu.co/index.php/actabiol/article/view/10593.
Potasman I, Paz A, Odah M. Infectious Outbreaks Associated with Bivalve Shellfish Consumption:A Worldwide Perspective. Clinical Infectious Diseases, 35: 921–928. 2002.
doi: 1058-4838/2002/3508-0002
Puerta GA & Mateos RF. Actualización Enterobacterias. Unidad de Enfermedades Infecciosas. Servicio de Medina Interna. Complejo Hospitalario Universitario de Albacete. Albacete. España. Medicine, 10(51): 3426–3431. 2010.
doi: 10.1016/S0304-5412(10)70056-1
Trujillo A & Ramírez J. Biorremediación en suelos contaminados con hidrocarburos en Colombia. Revista de Investigación Agraria y Ambiental, 3(2): 37–48. 2012.
doi: 10.22490/21456453.952
Umair M. Anthropogenic impacts on the coastal wetland and wildlife-A review. Journal of Wildlife and Ecology, 2(1): 30-36. 2018.
https://www.researchgate.net/publication/346007055_Anthropogenic_impacts_on_the_coastal_wetland_and_wildlife-A_review
Usese AI, Elike MI, Moruf RO, Chukwu LO. Levels of oxidative stress markers in the mangrove oyster, Crassostrea gasar from a coastal ecosystem in Southwest Nigeria. Journal of Research in Forestry, Wildlife and Environment, 11(1): 32–38. 2019.
Vásquez P, Holguín G, Puente ME, Lopez-Cortes A, Bashan Y. Phosphate-solubilizing microorganisms associated with the rhizosphere of mangroves in a semiarid coastal lagoon. Biol Fertil Soils, 30: 460–468. 2000
doi: 10.1007/s003740050024
Zar J. Biostatistical analysis. 3rd edition. Prentice Hall. Inc, New Jersey, US. 1996.
doi: 10.3923/rjes.2012.1.13
Aguirre-Rubí J, Luna-Acosta A, Ortiz-Zarragoitia, Zaldibar B, Izaguirre U, Ahrens MJ, Villamil L, Marigómez I. Assessment of ecosystems health disturbance in mangrove-limed Caribbean coastalsystems using the oyster Crassostrea rhizophorae as sentinel species. Science of the total environment, 718–735. 2018.
doi: 10.1016/j.scitotenv.2017.08.098
Alongi DM. Bacterial productivity and microbial biomass in tropical mangrove sediments. Microbial Ecology, 15: 59–79. 1988.
doi: 10.1007/BF02012952
Alongi DM & Boto KG. Tirendi F Effect of exported mangrove litter on bacterial productivity and dissolved organic carbon fluxes in adjacent tropical nearshore sediments. Marine Ecology Progress Series, 56: 133–144. 1989.
doi: 10.3354/MEPS056133
Barbier EB. Marine ecosystem services. Current Biology, 27(11): R489–R494. 2017.
doi: 10.1016/j.cub.2017.03.020
BD–Advancing the world of health. BD Phoenix™ AP. 2022. https://www.bd.com/es-es/our-products/industrial-microbiology/identification-and-susceptibility-systems/phoenix-ap
Beltrán A & Suárez L. Diagnóstico ambiental de los cuerpos internos de agua de la ciudad de Cartagena de Indias. Fundación universitaria Tecnológico Comfenalco, Cartagena, COLOMBIA.2016.
Bravo, M & Ortega W. Plan de manejo para el Acuerdo de Uso Sustentable y Custodia de los Manglares del Estuario Interior Central del Golfo de Guayaquil, Cerrito de los Morreños – Puerto Libertad. 2010. https://www.equatorinitiative.org/nomination_documents/4190279_PM%20cm.pdf.
Borremans B, Hobman J, Provoost A, Brown N, van Derlelie D. Cloning and functional analysis of the pbr lead resistance determinant of Ralstonia metallidurans CH34. Journal of Bacteriology, 183: 5651–5658. 2002.
doi: 10.1128/JB.183.19.5651-5658.2001
Clarke KR & Gorley RN. Getting started with PRIMER V7. PRIMER-E. UK. 2015.
Cortázar MA, González CA, Coronel OC, Escalante LJ, Castro RJ, Villagómez IJ. Biotecnología aplicada a la degradación de colorantes de la Industria textil. Universidad y Ciencia, 28(2): 187–199. 2012.
http://www.scielo.org.mx/scielo.php?script=sci_arttext&pid=S0186-29792012000200009&lng=es
Dash H, Mangwani N, Chakraborty J, Kumari S, Das S. Marine bacteria: potential candidates for enhanced bioremediation. Applied Microbiology and Biotechnology, 97: 561–571. 2013.
doi: 10.1007/s00253-012-4584-0
Díaz C, Castro I, Manjarréz G. Mangles de Cartagena de Indias: “Patrimonio Biológico y Fuente de Biodiversidad”. Fundación Universitaria Tecnológico Comfenalco, Cartagena, COLOMBIA. 2010.
Elbashir S, Parveen S, Schwarz J, Rippen T, Jahncke M, DePaola A. Seafood pathogens and information on antimicrobial resistance: A review. Food Microbiology, 70: 85e93. 2018.
doi: 10.1016/j.fm.2017.09.011
Ershadi A, Weiss E, Verduzco E, Chia D, Sadigh M. Emerging pathogen: a case and review of Raoultella planticola. Infection, 42(6): 1043–1046. 2014.
doi: 10.1007/s15010-014-0638-9
Franco-Herrera A. Oceanografía de la ensenada de Gaira. El rodadero, más que un centro turístico en el Caribe Colombiano. Fundación Universitaria Jorge Tadeo Lozano, Bogotá, COLOMBIA. 2005.
Ghizelini A, Mendonça-Hagler L, Macrae A. Microbial diversity in Brazilian mangrove sediments– A mini review. Brazilian Journal of Microbiology, 1242–1254. 2012.
doi: 0.1590/S1517-83822012000400002
Gil-Aguilar J, Labastida-Estrada E, Mineros-Ramirez R, Ramirez-Perez, E., Tenorio-Romero, RM. Chautengo Lagoon, Guerrero. Estimation of primary production and phytoplankton biomass and their association to some environmental conditions. Revista Digital del Departamento, 2(4): 1–14. 2013.
Gomes N, Borges L, Paranhos R, Pinto F, Mendonça-Hagler L, Smalla, K. Exploring the diversity of bacterial communities in sediments of urban mangrove forests. FEMS. Microbial Ecology, 66: 96–109. 2008
doi: 10.1111/j.1574-6941.2008.00519.x
González M, Graü C, Bettina L, Vásquez-Suárez A. Calidad microbiológica de la ostra Crassostrea rhizophorae y aguas de extracción, Estado Sucre, Venezuela. Revista Científica, 19(6): 659–666. 2009.
https://www.redalyc.org/pdf/959/95911621014.pdf
Graü C, La Barbera A, Zerpa A, Silva S, Gallardo O. Aislamiento de Vibrio spp. Y evaluación de la condición sanitaria de los moluscos bivalvos Arca zebra y Perna procedente de la costa nororiental del edo. Sucre. Venezuela. Veterinaria completa, 14(6): 1–17. 2004.
doi:10.1111/j.1574-6941.2008.00519.x
Gutiérrez-Moreno C, Marrugo M, Andrade C. Respuesta del ambiente marino a algunos eventos meteorológicos sinópticos medidos sobre los arrecifes de San Andrés y de las Islas del Rosario, Caribe colombiano. Boletín de Investigaciones Marinas y Costeras, 41(1): 219–228. 2012.
http://www.scielo.org.co/pdf/mar/v41n1/v41n1a12.pdf
Hammer O, Harper D, Ryan P. PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontologia Electronica, 4: 1–9. 2001.
https://palaeo-electronica.org/2001_1/past/past.pdf
Hawkins SJ, Allcock AL, Bates AE, Firth LB, Smith IP, Swearer SE, Todd PA. Oceanography and Marine Biology: An Annual Review. Oceanography and Marine Biology, 58: 395–440. 2020.
Hemraj DA, Hossain A, Ye Q, Qin J, Leterme S. Plankton bioindicators of environmental conditions in coastal lagoons. Estuarine, Coastal and Shelf Science 184: 102–114. 2017.
doi: 10.1016/j.ecss.2016.10.045
ICONTEC. Norma Técnica Colombiana 4458. Microbiología de alimentos y de alimentos para animales. Método horizontal para el recuento de Coliformes o Escherichia coli o ambos. Técnica de recuento de colonias utilizando medios fluorogénicos o cromogénicos. Instituto Colombiano de Normas Técnicas y Certificación (ICONTEC), 12: 12. 2007.
ICONTEC. Norma Técnica Colombiana NTC. 947-1. Determinación de la esterilidad comercial y la presencia de microorganismos viables en alimentos. Instituto Colombiano de Normas Técnicas y Certificación (ICONTEC), Apartado 14237. 9: 20. 2010.
ICONTEC. Norma técnica colombiana. NTC –ISO. 5667-2. Gestión Ambiental. Calidad del Agua. Muestreo. Técnicas Generales de Muestreo. Instituto Colombiano de Normas Técnicas y Certificación (ICONTEC), 11: 3. 2003.
Kavaruma V & Esposito E. Biotechnological strategies applied to the decontamination of soils polluted with heavy metals. Biotechnology advances, 28: 61–69. 2010.
doi: 10.1016/j.biotechadv.2009.09.002
Khan Z, Nisar M, Hussain S, Arshad M. Cadmium resistance mechanism in Escherichia coli P4 and its potential use to bioremediate environmental cadmium. Applied Microbiology and Biotechnology 99(24). 2015.
doi: 10.1007/s00253-015-6901-x
Lee R & Morgan O. Environmental Factors Inf luencing the Microbiological Contamination of Commercially Harvested Shellfish. Water Science and Technology, 47(3): 65–70. 2003.
https://pubmed.ncbi.nlm.nih.gov/12639007/
Ley General Ambiental de Colombia. LEY 99 DE 1993. Ministerio del Medio Ambiente. No. 41. p.p. 146.
Maciel-Souza MC, Macrae A, Volpon A, Ferreira P, Mendonça-Hagler L. Chemical and microbiological characterization of mangrove sediments after a large oil-spill in Guanabara Bay - RJ - Brazil. Brazilian Journal of Microbiology 37: 262–266. 2006.
Mendez P, Marinho PH, Lima MA. Copper influence on polyphosphate metabolism of Cunninghamella elegans. Brazilian Journal of Microbiology 36: 315–320. 2005.
doi: 10.1590/S1517-83822005000400002
Merchán A. Monitoreo de los manglares de ciénaga Honda-Puerto Bahía, Bolívar. Consultoría y Monitoreo Ambientales (MCS). Cartagena. 2016.
MINSALUD- Ministerio de Salud. Manual de técnicas recomendadas para el análisis microbiológico de alimentos. Bogotá, COLOMBIA. 1981.
Niu X, Edmiston H, Bailey G. Time Series Models for Salinity and Other Environmental Factors in the Apalachicola Estuarine System. Estuarine, Coastal and Shelf Science, 46(4): 549–563.
1998.
doi: 10.1006/ecss.1997.0294
Ortiz A, Robles K, Urrego L, Romero M. Diversidad e interacciones biológicas en el ecosistema de manglar. Revista de Ciencias, 22(2): 111–127. 2018.
doi: 10.25100/rc.v22i2.7925
Panigatti M, Griffa C, Boglione R, Gentinetta F, Cassina D. Uso de Escherichia coli para biorremediación de efluentes contaminados por cromo (VI). Avances en Ciencias e Ingeniería, 3:11–24. 2012.
https://www.redalyc.org/articulo.oa?id=323627686002
Pérez SR, Camacho P, Gómez MJ, Ábalos RA, Viñas M, Cantero MD. Aislamiento y selección de una cepa bacteriana degradadora de hidrocarburos a partir de suelos contaminados con petróleo. Revista CENIC, 39(1): 44–45. 2008.
https://revista.cnic.cu/index.php/RevBiol/article/view/651/531
Peixoto R, Chaer G, Carmo F, Araújo F, Paes J, Volpon A, Santiago G, Rosado A. Bacterial communities reflect the spatial variation in pollutant levels in Brazilian mangrove sediment. Antonie van Leeuwenhoek, 99: 341–354. 2011.
doi: 10.1007/s10482-010-9499-0
Pinilla G, Duarte J, Vega L. Índice de estado limnológico (IEL) para evaluar las condiciones ecológicas de las ciénagas del Canal del Dique, Colombia. Acta Biológica Colombiana, 15(2):169–188. 2010.
https://revistas.unal.edu.co/index.php/actabiol/article/view/10593.
Potasman I, Paz A, Odah M. Infectious Outbreaks Associated with Bivalve Shellfish Consumption:A Worldwide Perspective. Clinical Infectious Diseases, 35: 921–928. 2002.
doi: 1058-4838/2002/3508-0002
Puerta GA & Mateos RF. Actualización Enterobacterias. Unidad de Enfermedades Infecciosas. Servicio de Medina Interna. Complejo Hospitalario Universitario de Albacete. Albacete. España. Medicine, 10(51): 3426–3431. 2010.
doi: 10.1016/S0304-5412(10)70056-1
Trujillo A & Ramírez J. Biorremediación en suelos contaminados con hidrocarburos en Colombia. Revista de Investigación Agraria y Ambiental, 3(2): 37–48. 2012.
doi: 10.22490/21456453.952
Umair M. Anthropogenic impacts on the coastal wetland and wildlife-A review. Journal of Wildlife and Ecology, 2(1): 30-36. 2018.
https://www.researchgate.net/publication/346007055_Anthropogenic_impacts_on_the_coastal_wetland_and_wildlife-A_review
Usese AI, Elike MI, Moruf RO, Chukwu LO. Levels of oxidative stress markers in the mangrove oyster, Crassostrea gasar from a coastal ecosystem in Southwest Nigeria. Journal of Research in Forestry, Wildlife and Environment, 11(1): 32–38. 2019.
Vásquez P, Holguín G, Puente ME, Lopez-Cortes A, Bashan Y. Phosphate-solubilizing microorganisms associated with the rhizosphere of mangroves in a semiarid coastal lagoon. Biol Fertil Soils, 30: 460–468. 2000
doi: 10.1007/s003740050024
Zar J. Biostatistical analysis. 3rd edition. Prentice Hall. Inc, New Jersey, US. 1996.
How to Cite
López Gutiérrez, L., Torres, M., Zarza, E., Henao-Castro, A., & Contreras Vega, L. (2023). Composition of the culturable bacterial community associated with the water column and soft tissues from oysters of the mangrove ecosystem at Honda Swamp, Colombian Caribbean. Universitas Scientiarum, 28(1), 43–63. https://doi.org/10.11144/Javeriana.SC281.cotc
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Marine Biology, Oceanography, Ecology
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